New York San Juan

2 nonstop pairs · 6 nonstop airlines · 293 nonstop flights/week

JetBlue flies JFK to San Juan so often it feels like a shuttle. No passport, no customs line. Puerto Rico is a US territory, so you walk off the plane and go.

Book JetBlue from JFK. They have more seats on this route than everyone else combined, with departures all day. Delta flies it three times daily if you have status or SkyMiles to burn.

If you are closer to Newark, check United before trekking to JFK. United flies Newark to San Juan three times a day, and sometimes puts a 787 or 767 on the route. Those are widebody aircraft on a four-hour flight, which means a wider seat and a quieter cabin than the single-aisle A320s every other carrier uses. The equipment rotates, so check the aircraft type before booking. A widebody listing is worth choosing Newark over JFK.

Frontier and Spirit fly from both JFK and Newark for the lowest fares. You give up free bags and schedule flexibility, but on a four-hour beach trip most people will not care.

Ignore LGA. There is barely one flight a week.

The Isla Verde hotel strip is right next to the airport. Condado is 15 minutes by Uber, Old San Juan 20. Uber works here the same as on the mainland.

Have a specific need? Use the decision guide below to filter by your airline, where you live, lounges, or where you're staying in San Juan.

Best Overall
JFK SJU
2 airlines 237/wk 4h 3m
31% on-time
JetBlue, Delta Air Lines. Also bookable via Frontier, Air France. JetBlue from JFK gives you up to eight daily nonstops and the most flexible schedule.
Explore JFK → SJU
Strong Alternative
EWR → SJU
2 airlines · 56/wk · 4h 01m
JetBlue, United Airlines. Also bookable via Frontier, Spirit Airlines. United from Newark runs three daily flights and saves the drive to JFK if you live in New Jersey, but the total schedule is smaller.
77%

Pick What Matters to You

Show me the best pair for...

Best pair by where you're coming from

Your location determines which airport is closest and most convenient.
Manhattan (Midtown and Below) Best
JFK via AirTrain and subway or LIRR from Jamaica, 60 to 75 minutes total. Newark is faster from Penn Station: NJ Transit takes around 25 minutes. Both airports have nonstop international service.
Brooklyn Best
JFK is the closer airport. The drive is 30 to 50 minutes depending on Belt Parkway traffic. A train to Howard Beach, then AirTrain to the terminal. Newark adds a river crossing and at least 20 extra minutes.
Queens Best
JFK is in Queens. Depending on your neighborhood, the drive is 15 to 30 minutes. The easiest airport connection in the metro area.
Northern New Jersey Best
Newark. No question. I-78, I-95, or the Garden State Parkway depending on direction. No river crossings, no city traffic.
The Bronx Flexible
Both airports are roughly equidistant and neither is convenient. JFK requires subway transfers. Newark means getting to Penn Station first. Budget extra time from the Bronx either way.
Westchester and North of the City Good
Newark via I-287 avoids Manhattan entirely. JFK means driving through the Bronx or taking Metro-North to Penn for the subway connection. Newark is the better call from most of Westchester.
For most New York-area travelers, JFK → SJU is the default.4 airlines, 237 flights/wk.
Explore JFK → SJU

Best pair by where you're staying in San Juan

Your San Juan airport matters as much as your New York airport.
Old San Juan Best
The walled colonial district with cobblestone streets and two large forts. About 20 minutes from the airport by Uber. Most first-time visitors base themselves here or spend at least a full day walking through. Hotels range from small boutiques in converted historic buildings to larger chains near the cruise port.
Condado Good
The main hotel and restaurant strip with direct beach access. Sits between Old San Juan and the airport, about 10 minutes from each. This is where most resort-style hotels cluster, and the walkable stretch of Ashford Avenue has the densest dining options outside Old San Juan.
Isla Verde Tradeoff
Right next to the airport. If you have a short trip or a late arrival, this is the most convenient place to stay. The beach is wide and good for swimming. Hotels skew large and chain-operated. Some properties are within a short walk or shuttle ride from the terminal.
Santurce Value
The arts and food district south of Condado. Street murals, galleries, and the best local restaurant scene in the metro area. Not a beach neighborhood. Stay here if nightlife and food matter more than a view of the water.
Ocean Park Good
A quieter residential beach area between Condado and Isla Verde. Small guesthouses and vacation rentals instead of high-rises. Good for travelers who want sand and water without the resort atmosphere.
Beyond the San Juan Metro Tradeoff
Visiting family or heading to the west coast surf towns, the bioluminescent bays, or the rainforest means renting a car at the airport. The island is roughly 100 miles across. Rincon, Cabo Rojo, and Vieques draw travelers who want something different from the San Juan beach strip.
SJU is the right San Juan airport for most travelers.Check individual route pages for ground transport from SJU.
Explore JFK → SJU

Which pair your airline flies nonstop

Loyalty programs drive airport choice for frequent flyers. Here's where each airline operates.
AirlineJFK–SJUEWR–SJU
JetBlue
Delta Air Lines
Frontier
Spirit Airlines
United Airlines
Air France
Most airlines fly JFK → SJU.2 airlines serve multiple pairs.
Explore JFK → SJU

Ranked by on-time performance

On-time = departing within 15 min of schedule. Higher competition tends to keep airlines punctual.
JFK → SJU #1
31% on-time. 4 airlines competing means schedule padding is tight and delays get absorbed.
EWR → SJU
77% on-time. 4 airlines competing.
1 other pair
Insufficient data — 1 flight/week doesn't generate meaningful OTP stats.
JFK → SJU has a 31% on-time record.High competition keeps airlines punctual.
Explore JFK → SJU

Lounge access by airport and terminal

Premium lounge access varies dramatically by terminal. This alone can determine airport choice for some travelers.
Terminal B Lounges Good
The rebuilt Terminal B has airline club lounges with seating, Wi-Fi, drinks, and light food. Access through airline loyalty programs or eligible credit cards. The new terminal makes the lounge experience better than what LaGuardia used to offer, which was close to nothing.
Terminal C Lounges Good
Club lounges in Terminal C for eligible passengers. Same access rules: airline status, credit card membership, or a same-day qualifying ticket. Quality is standard domestic lounge level.
Gate Areas
The rebuilt terminals have better gate seating, charging outlets, and food options than the old LaGuardia. On a short domestic flight, the gate area is fine. Spend the lounge walk-in fee on dinner at the destination instead.
JFK T4 Centurion Lounge Top Tier
American Express Platinum or Centurion cardholders. Cocktail bar, sit-down dining, showers. One of the better Centurion locations. Access is card-based regardless of airline.
JFK T4 Delta Sky Club Good
Large club with runway views, full bar, and hot food. Gets crowded during the evening international push. Delta One and SkyMiles status get you in; everyone else needs a same-day Delta boarding pass plus a qualifying credit card.
JFK T8 Flagship Lounge Top Tier
American and British Airways premium cabin passengers. Quieter than T4, with showers and a dining room. BA passengers flying Club Suite have access here before JFK to Heathrow flights.
JFK T5 JetBlue Mint Lounge Good
Open to Mint passengers on JetBlue. Smaller than the legacy carrier clubs but less crowded. Food and drinks included. The terminal itself has decent food options if the lounge is full.
JFK T1 International Lounges Good
A collection of carrier-specific lounges including Turkish, Air France, and Korean Air. Quality varies. The Turkish lounge is a standout if you have access.
EWR Terminal C Polaris Lounge Top Tier
United Polaris passengers and Star Alliance business class. Full sit-down restaurant with table service, shower suites, daybeds, and a cocktail bar. One of the best airline lounges in North America. If you are flying United Polaris business class, arrive early and use it.
EWR Terminal C United Club Good
Standard United Club with hot food, bar, and seating. Multiple locations in Terminal C. Gets crowded during the evening departure wave. United Club membership, Star Alliance Gold, or certain credit cards get you in.
EWR Terminal A Lounges Good
The rebuilt Terminal A has fresh lounge space. Carrier-specific lounges are still filling in. The terminal itself is well-designed with better food options than the old building.
Priority Pass Lounges Good
Priority Pass cardholders can access a lounge in the terminal. Space and food are basic but it beats waiting at the gate during a delay. Check the Priority Pass app for current hours and availability, as participating lounges can change.
Limited Options Overall
Lounge access at SJU is more limited than at major mainland hubs. If you do not have a lounge membership or airline status, the post-security restaurants are a better use of your time than paying for a day pass.
Your airline and cabin class determine which lounges you can access.Check route pages for terminal assignments.
Explore JFK → SJU

Ranked by flights per week

More flights = more flexibility. Miss your flight, catch the next one. Schedule depth is insurance.
JFK → SJU #1
237/wk (~34/day) — 4 airlines. A departure roughly every 43 minutes at peak.
EWR → SJU
56/wk (~8/day) — 4 airlines.
1 other
1/wk each. Not viable for flexible travel planning.
JFK → SJU: 237 flights/week.Miss one flight, wait 43 min for the next.
Explore JFK → SJU

Getting to the airport

Cost and time vary by mode. Train is more predictable than driving.
Taxi or Rideshare Best
From midtown Manhattan, 20 to 30 minutes depending on traffic. Around $30 to $40 by taxi. The Grand Central Parkway connects directly. Morning rush into the city and evening rush out are the times to avoid.
Q70 SBS Bus to Subway Good
Runs from all LaGuardia terminals to the Jackson Heights subway hub in about 10 minutes. Transfer to the 7, E, F, M, or R train for Manhattan, Brooklyn, or Queens. The cheapest way to the airport from anywhere with a subway connection.
M60 SBS Bus Flexible
Runs across 125th Street in Manhattan to LaGuardia, connecting to the A, B, C, and D trains and Metro-North at Harlem-125th Street. Useful from the Upper West Side, Harlem, or the Bronx. Around 40 to 50 minutes from the West Side.
Driving and Parking Flexible
No rail link to LaGuardia. If you drive, parking runs around $40 per day in the terminal garages. Cell phone lots are free for pickup. The airport is compact enough that the walk from parking to gates stays short.
AirTrain + LIRR Best
AirTrain to Jamaica Station, then Long Island Rail Road to Penn Station in around 20 minutes. Faster and more comfortable than the subway, and you avoid dragging luggage underground. This is the best option for midtown Manhattan.
AirTrain + Subway Value
AirTrain to Jamaica or Howard Beach, then the E or A train into Manhattan. Total time is 60 to 75 minutes. Cheap but slow, and dragging luggage through the subway at rush hour is miserable.
Taxi Flexible
Flat rate of around $110 from JFK to anywhere in Manhattan, plus tolls and tip. Predictable pricing but travel time depends entirely on traffic. The Van Wyck Expressway can turn a 40-minute ride into 90 minutes during rush hour.
Car Service / Black Car
Pre-booked car services run around $70 to $100 depending on vehicle type. No flat-rate guarantee like yellow cabs, but you get a driver waiting at arrivals. Worth it if you are landing late or have a lot of luggage.
NJ Transit from Penn Station Best
Train from New York Penn Station to Newark Airport station in around 25 minutes, then AirTrain to your terminal. Frequent service, cheap, and immune to tunnel traffic. The most reliable way to get to Newark from Manhattan.
Taxi / Rideshare Flexible
No flat rate from Manhattan to Newark. Expect around $60 to $90 depending on traffic and tolls. The Lincoln Tunnel and NJ Turnpike can double your travel time during rush hour. Fine on weekends or off-peak.
Newark Airport Express Bus Value
Bus service from midtown Manhattan (Port Authority, Bryant Park, Grand Central) to all terminals. Takes 40 to 60 minutes depending on traffic. Around $19 one way. A budget option if you are not in a rush.
Car from New Jersey
If you live in northern New Jersey, the drive is straightforward. I-78, I-95, or the Garden State Parkway depending on your direction. Parking is expensive long-term. Cell phone lots exist for pickup.
Weigh transit time against schedule flexibility.A faster airport with fewer flights may not save you time overall.
Explore JFK → SJU

Red-eye vs daytime departures

Departure timing affects jet lag, hotel costs, and how you spend your first day.
The Four-Hour Problem Tradeoff
The flight is too short for real sleep. You board late, the cabin goes dark, and by the time you settle in, descent starts. You land in San Juan before sunrise with a few dead hours before breakfast spots and hotel check-in desks open. It saves a hotel night but you start the trip running on empty.
Morning Departure Best
A morning flight from JFK or Newark gets you to San Juan by early afternoon. You lose half a day at the origin but arrive functional and can check in, eat, and have a full evening in the city. For a vacation or a family visit, this is the better trade on a four-hour flight.
JFK → SJU has the most departure options.Check the route page for schedule details.
Explore JFK → SJU

Premium cabin options

Business and first class products on this route, ranked by value and quality.
JetBlue Mint from JFK Top
JetBlue offers Mint on select JFK departures. It is a lie-flat suite with a closing door, the same product used on six-hour transcontinental flights. On four hours to San Juan you get a full meal and a flat bed, which is unusual for a domestic route of this length. Check the seat map when booking to confirm Mint is on your flight.
Delta First Class from JFK Good
Standard domestic first class with a recliner seat, not a flat bed. Extra legroom, a meal, and free drinks. On a four-hour flight the recliner is comfortable enough. The gap between this and JetBlue Mint is significant in both product and price.
United First Class from Newark Good
Similar to Delta's domestic product: a recliner seat with meal service. Useful if you are based in New Jersey or building MileagePlus status. The seat is a standard domestic first class recliner, not a lie-flat.
Check route pages for cabin details per airline.Business class products vary significantly between carriers.
Explore JFK → SJU

Connecting through New York from a domestic flight

Nonstop flights run all day from both JFK and Newark, so connecting through another city adds hours to what is already a short trip. The only reason to connect is if you are starting from a city without direct San Juan service and routing through New York. From anywhere in the New York metro area, book the nonstop.

Arriving LGA
LGA has no San Juan nonstops. Your airline may offer a single-ticket connection through a hub. Otherwise, ground transport to a nonstop airport.
Arriving JFK Best
Book JFK → SJU. Same airport, no ground transport needed. 4 airlines, 237/wk.
Arriving EWR Best
Book EWR → SJU. Same airport, no ground transport needed. 4 airlines, 56/wk.
Self-connecting
Avoid cross-airport transfers. No direct transit links between most metro airports. Budget 4+ hours minimum if you must.
Check which New York airport your domestic flight arrives at, then book San Juan from that same airport.JFK arrivals → JFK–SJU · EWR arrivals → EWR–SJU
JFK → SJU

New York & San Juan Airport Profiles

Each airport has a personality. Terminal quality, transit access, lounge scene, and crowd levels vary dramatically — sometimes more than the flight itself.

JFK John F. Kennedy International Airport Primary

JFK spreads across four active passenger terminals connected by the AirTrain, and walking between them is not an option. Terminal 1 is the old international building. Terminal 4 is the largest, handling most international carriers. Terminal 5 is the former TWA terminal, now JetBlue's home, with the mid-century curves still intact. Terminal 8 belongs to American and British Airways.

The terminal you depart from depends entirely on your airline. Security wait times vary between them. Terminal 4 tends to be the slowest during evening international departures. Terminal 8 has improved since the co-location of its two main carriers. The TWA Hotel sits adjacent to Terminal 5 if you need to sleep before an early departure or after a late arrival.

JFK feels enormous because it is. Budget extra time for the AirTrain if you are connecting between terminals or arriving by subway. The AirTrain loop takes 10 to 15 minutes end to end.

San Juan Pairs
1
SJU
Airlines
4
Flights/Week
237
EWR Newark Liberty International Airport Secondary

Newark Liberty has three terminals, and Terminal A opened as a full rebuild in 2023. The old Terminal A was demolished and replaced, and the difference is dramatic. Terminal C is United's hub, massive and busy, with most international flights departing from here. Terminal B handles most other carriers.

The AirTrain connects all three terminals and the NJ Transit / Amtrak rail station. Unlike JFK, the terminals are closer together and the AirTrain loop is faster. Security at Terminal C can back up during afternoon and evening international departures.

The airport sits in New Jersey, around 10 miles from Manhattan. That proximity is deceptive because the drive crosses the Hudson via the Newark Bay or Lincoln Tunnel, and both can be brutal during peak hours. NJ Transit from Penn Station is the more reliable option.

San Juan Pairs
1
SJU
Airlines
4
Flights/Week
56
LGA LaGuardia Airport No Nonstop

No high-frequency connections found. Check LGA routes for all options.

SJU Luis Munoz Marin International Airport Primary

Luis Munoz Marin International sits in the Isla Verde area of Carolina, about nine miles east of Old San Juan. The terminal is compact, with connected concourses you can walk end to end without rushing.

The airport went through a renovation that modernized the check-in hall, added more dining and retail, and improved the security area. Post-security options include local restaurants alongside familiar chains. Security lines can build during morning departures and holiday weekends, but the walk to any gate is short once you are through.

New York Pairs
3
JFK + EWR + LGA
Nonstop from New York
293/wk
Into San Juan
15 min
Rideshare
SIG Fernando Luis Ribas Dominicci Airport No Nonstop

Full Comparison

Every airport combination ranked by schedule depth. JFK–SJU carries 81% of weekly flights with the best on-time record. EWR–SJU adds another 19%. The remaining 1 pair shares 0% between them.

RouteAirlinesFlights/WkShareDurationOTP
JFK → SJU 2 237
4h 03m 31% Explore →
EWR → SJU 2 56
4h 01m 77% Explore →
LGA → SJU 1 0 4h 02m 44% Explore →

Which Airlines Fly Which Pairs

JetBlue serve both JFK and EWR to SJU — airport flexibility on the New York side.

Not all planes are the same size. The aircraft type below each checkmark tells you whether you are getting a widebody (777, 787, A350) with wider seats and a quieter ride, or a narrowbody (737, A321) with a single aisle. On flights over five hours, the difference is significant.

JFK–SJU
EWR–SJU
JetBlue

A320, A321

A320
Delta Air Lines

A321neo
United Airlines

767-400, 737 MAX 9
Air France (codeshare)

A321neo
Frontier (codeshare)

A20N

A321neo
Spirit Airlines (codeshare)

A320neo

Route Facts

Total Nonstops
293/wk
Across 2 pairs
Airlines
6
4 on JFK–SJU
Fastest Pair
4h 3m
JFK → SJU
Distance
1,613 mi
2,595 km
New York
3 airports
LGA, JFK, EWR
San Juan
2 airports
SJU, SIG
Best OTP
77%
EWR → SJU
No Nonstop
LGA
No San Juan nonstops

Frequently Asked Questions

Common questions about New York to San Juan flights.
Both airports have multiple daily nonstops to San Juan. JFK has more total flights because JetBlue runs its largest San Juan schedule there. Newark has United as the anchor plus Spirit and Frontier for budget fares. From Midtown, travel time to either airport is similar and depends on traffic. If you have no airline loyalty pulling you one way, JFK gives you more schedule flexibility.
About 20 minutes by Uber or taxi. Rideshare apps work the same as anywhere in the US since Puerto Rico is a US territory. Taxis queue at the arrivals terminal with posted zone-based pricing. There is no rail link from the airport to Old San Juan.
No. Puerto Rico is a US territory and the flight is domestic. You clear standard TSA security at departure and walk off the plane in San Juan with no customs or immigration process. A valid government-issued photo ID is all you need to board.
JetBlue offers Mint, its lie-flat premium cabin, on select JFK to San Juan departures. The seat is the same product used on transcontinental flights: a private suite with a door, a flat bed, and included food and drinks. On a four-hour flight, you get the full Mint service but less time to enjoy it. Check the seat map when booking to confirm Mint is available on your specific departure.
The base fare on Spirit or Frontier can be hundreds less than JetBlue. Add a carry-on and a checked bag to the budget carrier price and the gap narrows to a few dollars. If you can travel with just a personal item, the savings are real. If you need full-size luggage, compare total cost before booking.
Late evening departures exist from JFK, but the flight is only about four hours. You land in the early morning hours before sunrise with very little sleep. An early morning departure gets you to San Juan by early afternoon with no sleep debt. The red-eye saves a hotel night but costs you the next morning in fatigue.